TWGFD
The tetraploid wheat gene family database
A
Download the VCF file:
download
| Id | downstream_gene_variant | splice_region_variant&intron_variant | splice_region_variant&synonymous_variant | missense_variant | intron_variant | stop_gained | 5_prime_UTR_variant | missense_variant&splice_region_variant | synonymous_variant | splice_region_variant | upstream_gene_variant | 3_prime_UTR_variant | 5_prime_UTR_premature_start_codon_gain_variant | stop_retained_variant | splice_donor_variant&intron_variant | stop_lost&splice_region_variant | splice_acceptor_variant&intron_variant |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TraesCS7A02G165700.1 | 34 | 0 | 0 | 3 | 2 | 0 | 0 | 0 | 2 | 0 | 47 | 0 | 0 | 0 | 0 | 0 | 0 |
| TraesCS5A02G041500.1 | 22 | 3 | 0 | 2 | 7 | 0 | 0 | 0 | 10 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 |
| TraesCS1A02G275800.1 | 41 | 0 | 0 | 1 | 2 | 0 | 1 | 0 | 2 | 0 | 28 | 0 | 0 | 0 | 0 | 0 | 0 |
| TraesCS7A02G469900.1 | 1 | 1 | 0 | 2 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| TraesCS5A02G320500.1 | 38 | 0 | 0 | 3 | 16 | 0 | 0 | 0 | 4 | 0 | 49 | 0 | 0 | 0 | 0 | 0 | 0 |
| TraesCS6A02G224400.1 | 40 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 |
| TraesCS7A02G377100.1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| TraesCS7A02G415800.1 | 22 | 0 | 0 | 6 | 21 | 0 | 2 | 0 | 1 | 0 | 14 | 0 | 0 | 0 | 0 | 0 | 1 |
| TraesCS6A02G137800.1 | 0 | 0 | 0 | 1 | 0 | 0 | 2 | 0 | 1 | 0 | 55 | 0 | 0 | 0 | 0 | 0 | 0 |
| TraesCS2A02G331200.1 | 67 | 0 | 0 | 5 | 0 | 0 | 1 | 0 | 1 | 0 | 22 | 1 | 0 | 1 | 0 | 0 | 0 |
| TraesCS6A02G265300.1 | 8 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 29 | 0 | 0 | 0 | 0 | 0 | 0 |
| TraesCS6A02G318900.1 | 40 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 3 | 0 | 75 | 0 | 0 | 0 | 0 | 0 | 0 |
| TraesCS7A02G258600.1 | 11 | 0 | 0 | 10 | 20 | 0 | 0 | 0 | 6 | 0 | 39 | 3 | 0 | 0 | 0 | 0 | 0 |
| TraesCS7A02G036100.1 | 35 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 |
| TraesCS2A02G069300.1 | 16 | 0 | 1 | 2 | 10 | 0 | 2 | 0 | 7 | 0 | 33 | 0 | 0 | 0 | 0 | 0 | 0 |
B
Download the VCF file:
download
| Id | splice_region_variant&synonymous_variant | stop_gained | 5_prime_UTR_premature_start_codon_gain_variant | 5_prime_UTR_variant | intron_variant | 3_prime_UTR_variant | downstream_gene_variant | splice_region_variant&intron_variant | upstream_gene_variant | splice_donor_variant&intron_variant | stop_retained_variant | splice_region_variant | missense_variant | synonymous_variant |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TraesCS5B02G290500.1 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 116 | 0 | 0 | 0 | 8 | 4 |
| TraesCS7B02G200700.1 | 0 | 0 | 0 | 0 | 0 | 0 | 16 | 0 | 8 | 0 | 0 | 0 | 0 | 0 |
| TraesCS7B02G251400.1 | 0 | 0 | 0 | 0 | 10 | 0 | 6 | 0 | 18 | 0 | 0 | 0 | 0 | 0 |
| TraesCS3B02G109800.1 | 0 | 0 | 0 | 0 | 0 | 0 | 46 | 0 | 14 | 0 | 0 | 0 | 2 | 2 |
| TraesCS7B02G036700.1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 18 | 0 | 0 | 0 | 0 | 0 |
| TraesCS2B02G589700.1 | 0 | 0 | 0 | 0 | 30 | 14 | 0 | 0 | 32 | 0 | 0 | 0 | 0 | 8 |
| TraesCS5B02G320800.1 | 0 | 0 | 0 | 4 | 16 | 24 | 26 | 0 | 94 | 0 | 2 | 0 | 8 | 14 |
| TraesCS3B02G423600.1 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 56 | 0 | 0 | 0 | 0 | 2 |
| TraesCS1B02G279400.1 | 0 | 0 | 2 | 2 | 0 | 0 | 96 | 0 | 64 | 0 | 0 | 0 | 0 | 2 |
| TraesCS2B02G399200.1 | 0 | 0 | 0 | 0 | 2 | 0 | 32 | 0 | 24 | 0 | 0 | 0 | 0 | 0 |
| TraesCS3B02G124100.1 | 0 | 0 | 0 | 0 | 28 | 2 | 2 | 0 | 64 | 0 | 0 | 0 | 0 | 2 |
| TraesCS7B02G156100.1 | 0 | 0 | 0 | 0 | 8 | 2 | 34 | 0 | 6 | 0 | 0 | 0 | 6 | 0 |
| TraesCS5B02G157300.1 | 0 | 0 | 0 | 1 | 0 | 0 | 6 | 0 | 18 | 0 | 0 | 0 | 1 | 0 |
| TraesCS6B02G394700.1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | 6 |
| TraesCS5B02G056600.1 | 0 | 0 | 0 | 0 | 0 | 0 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |