TWGFD
The tetraploid wheat gene family database
A
Download the VCF file:
download
| Id | downstream_gene_variant | splice_region_variant&intron_variant | splice_region_variant&synonymous_variant | missense_variant | intron_variant | stop_gained | 5_prime_UTR_variant | missense_variant&splice_region_variant | synonymous_variant | splice_region_variant | upstream_gene_variant | 3_prime_UTR_variant | 5_prime_UTR_premature_start_codon_gain_variant | stop_retained_variant | splice_donor_variant&intron_variant | stop_lost&splice_region_variant | splice_acceptor_variant&intron_variant |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TraesCS5A02G101000.1 | 21 | 0 | 0 | 5 | 5 | 0 | 0 | 0 | 4 | 0 | 56 | 1 | 0 | 0 | 0 | 0 | 0 |
| TraesCS5A02G087100.1 | 53 | 0 | 0 | 3 | 5 | 0 | 0 | 0 | 1 | 0 | 58 | 2 | 0 | 0 | 0 | 0 | 0 |
| TraesCS7A02G135100.1 | 10 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7 | 0 | 0 | 0 | 0 | 0 | 0 |
| TraesCS6A02G330400.1 | 30 | 1 | 0 | 2 | 1 | 0 | 0 | 0 | 2 | 0 | 37 | 0 | 0 | 0 | 0 | 0 | 0 |
| TraesCS7A02G247200.1 | 2 | 0 | 0 | 3 | 3 | 0 | 0 | 0 | 9 | 0 | 5 | 1 | 0 | 0 | 0 | 0 | 0 |
| TraesCS6A02G198000.1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 0 |
| TraesCS7A02G205100.1 | 7 | 1 | 0 | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 50 | 3 | 0 | 0 | 0 | 0 | 0 |
| TraesCS1A02G076200.1 | 45 | 0 | 0 | 6 | 0 | 0 | 3 | 0 | 3 | 0 | 79 | 3 | 0 | 0 | 0 | 0 | 0 |
| TraesCS4A02G211100.1 | 46 | 0 | 0 | 1 | 11 | 0 | 1 | 0 | 3 | 0 | 21 | 3 | 0 | 0 | 0 | 0 | 0 |
| TraesCS6A02G266400.1 | 31 | 0 | 0 | 2 | 15 | 0 | 6 | 0 | 3 | 0 | 38 | 0 | 0 | 0 | 0 | 0 | 0 |
| TraesCS7A02G030600.1 | 3 | 0 | 0 | 1 | 1 | 0 | 1 | 0 | 1 | 0 | 23 | 3 | 0 | 0 | 0 | 0 | 0 |
| TraesCS3A02G056100.1 | 0 | 0 | 0 | 1 | 7 | 0 | 0 | 0 | 3 | 0 | 86 | 0 | 0 | 0 | 0 | 0 | 0 |
| TraesCS1A02G042700.1 | 47 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 48 | 0 | 0 | 0 | 0 | 0 | 0 |
| TraesCS2A02G079700.1 | 14 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 0 |
| TraesCS2A02G370300.1 | 55 | 1 | 0 | 2 | 7 | 0 | 3 | 0 | 7 | 0 | 29 | 14 | 0 | 0 | 0 | 0 | 0 |
B
Download the VCF file:
download
| Id | splice_region_variant&synonymous_variant | stop_gained | 5_prime_UTR_premature_start_codon_gain_variant | 5_prime_UTR_variant | intron_variant | 3_prime_UTR_variant | downstream_gene_variant | splice_region_variant&intron_variant | upstream_gene_variant | splice_donor_variant&intron_variant | stop_retained_variant | splice_region_variant | missense_variant | synonymous_variant |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TraesCS7B02G031000.1 | 2 | 0 | 0 | 0 | 0 | 8 | 2 | 0 | 104 | 0 | 0 | 2 | 10 | 4 |
| TraesCS5B02G330100.1 | 0 | 0 | 0 | 2 | 8 | 0 | 20 | 0 | 58 | 0 | 0 | 0 | 2 | 4 |
| TraesCS7B02G020700.1 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 4 | 0 | 0 | 0 | 2 | 0 |
| TraesCS1B02G434800.1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| TraesCS1B02G172500.1 | 0 | 0 | 0 | 0 | 2 | 0 | 70 | 0 | 34 | 0 | 0 | 0 | 0 | 0 |
| TraesCS4B02G191200.1 | 0 | 0 | 0 | 2 | 0 | 0 | 34 | 0 | 0 | 2 | 0 | 0 | 0 | 0 |
| TraesCS3B02G068900.1 | 0 | 0 | 0 | 0 | 0 | 0 | 16 | 0 | 18 | 0 | 2 | 0 | 4 | 8 |
| TraesCS5B02G141200.1 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 4 | 0 | 0 | 0 | 0 | 0 |
| TraesCS6B02G296300.1 | 0 | 0 | 0 | 2 | 2 | 0 | 28 | 0 | 32 | 0 | 0 | 0 | 0 | 0 |
| TraesCS5B02G278000.1 | 0 | 0 | 0 | 0 | 0 | 0 | 19 | 0 | 15 | 0 | 0 | 0 | 0 | 0 |
| TraesCS1B02G293300.1 | 0 | 0 | 0 | 0 | 16 | 0 | 54 | 0 | 66 | 0 | 0 | 0 | 2 | 2 |
| TraesCS5B02G068000.1 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| TraesCS7B02G238000.1 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | 0 | 3 | 0 | 0 | 0 | 0 | 0 |
| TraesCS6B02G257100.1 | 0 | 0 | 0 | 0 | 0 | 0 | 32 | 0 | 8 | 0 | 0 | 0 | 1 | 2 |
| TraesCS3B02G517000.1 | 0 | 0 | 2 | 0 | 10 | 0 | 0 | 0 | 26 | 0 | 0 | 0 | 6 | 2 |